Hello Jeff and Sid and thanks for your reply.
The system specs are as follows:
MOBO: INTEL DP45SG
Processor: Intel 3.4ghz core duo
RAM: 3.99Gb
NIC: D-Link DGE-530T Gigabit
(On Board) NIC: INTEL 82567LF-2 Gigabit
Graphics: Nvidia Quadro FX 570
Video Playback: BlackMagic Design Intensity Pro
FW: Agere Compliant 1394 Host Controller
Intel 4 Series Chipset PCI
Now the things that ring a bell to me are the Agere chip which after some reading I am finding to be less than stellar.
There is some IRQ sharing going on which also may be at fault. Both NIC's are in use for the LAN as well as interfacing a console with the system. So which card is at fault is anyone's guess. One thing that has been brought to my attention is that using the internet (tsk tsk) and visiting other machines over the LAN cause the bad behaviour to rear it's head more often than not. I'm feeling like it is network related. The other thing is that there are several audio devices installed. On board audio, ASIO for the FF800 as well as the BlackMagic Audio device drivers.
Any thoughts are welcome. I will run latency checker ASAP and get the results posted.
Cheers,
Josh Vamos